Predrag Radivojac

[Teaching] [Research] [People] [Publications] [Software] [FAQ]


Pedja Radivojac, Indiana University, 2013

Professor of Computer Science and Informatics

Adjunct Professor of Statistics


Department of Computer Science and Informatics

Indiana University

150 South Woodlawn Avenue

Bloomington, IN 47405

Office:  Lindley Hall 301F

Phone:  (812) 856-1851


Download my curriculum vitae in pdf format (last updated on 08/09/2015). Google Scholar profile.


Post-doctoral fellow, Bioinformatics, Indiana University School of Medicine, Indianapolis, Indiana, 2004

Ph.D., Computer and Information Sciences, Temple University, Philadelphia, Pennsylvania, 2003

M.S., Electrical Engineering, University of Belgrade, Serbia, 1997

B.S., Electrical Engineering, University of Novi Sad, Serbia, 1994

Professional Activities:

Board of Directors Member, International Society for Computational Biology (ISCB), 2012-

Associate Editor, PLoS Computational Biology, 2014-

Editorial Board Member, Bioinformatics, Oxford University Press, 2010-

Recent Updates:

  1. (September 2015) Jose receives travel fellowship for the  Biomedical Data Research Workshop at SHILAC 2015.

  2. (September 2015) Kym's paper on the impact of loss-of-function genetic variants accepted at PSB 2016.

  3. (August 2015) Chao receives NSF travel fellowship for ACM BCB 2015.

  4. (August 2015) Neelam's and Vikas' paper accepted in ACS Chemical Biology. Available here.

  5. (August 2015) Emma receives fellowship to attend Math Modeling Workshop at the University of Minnesota, August 5-14, 2015.

  6. (July 2015) Rodrigo's and Sujun's paper on proteomic identification of alternatively spliced isoforms accepted in IEEE-ACM TCBB.

  7. (July 2015) Chao's paper on label-free quantification accepted at ACM BCB 2015.

  8. (June 2015) Jose presents his work at the Interface symposium.

  9. (May 2015) GLBIO goes great at Purdue, see some pictures. Next year, Toronto!

  10. (May 2015) Jose and Rodrigo give talks at GLBIO 2015. Emma, Kym, Sujun, Vikas, Yuxiang present posters.

  11. (April 2015) Pedja promoted to full professor by IU Board of Trustees, officially starting July 1.

  12. (April 2015) Our 10 Simple Rules paper published in PLoS Computational Biology.

  13. (September 2014) Jose's paper on edit distance graphlet kernels officially published in Network Science. Available here.

Research Interests:

Bioinformatics and Computational Biology

 Protein structure and function; method development and evaluation for function prediction.

 Post-translational modifications (PTMs)

 Mass spectrometry (MS) and MS/MS proteomics.


Biomedical Informatics and Applications to Human Health

 Development of computational models for understanding and predicting molecular mechanisms of disease.

 Candidate gene prioritization and biomarker discovery.

 Genome interpretation.


Machine Learning

 Supervised and semi-supervised learning: learning from positive and unlabeled data; learning from biased data.

 Structured-output learning and evaluation; extreme classification.

 Kernel-based inference on sequences, time-series, and graphs.


Last modified: September 23, 2015